NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211522_1002609

Scaffold Ga0211522_1002609


Overview

Basic Information
Taxon OID3300020314 Open in IMG/M
Scaffold IDGa0211522_1002609 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4837
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8199Long. (o)63.5138Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040347Metagenome / Metatranscriptome162N
F041247Metagenome / Metatranscriptome160N
F061913Metagenome / Metatranscriptome131N
F084452Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0211522_10026091F040347GGAGMNRWDITVKQSNYDFNPFRESDHGKYFKTVANIYEDWSKELEYANKQQYDFYWPSPVKPDGDHFDYEYENKLVEDWGIPKDFVIYRMWTATKKECPILCGLADKLGLEDAQVNIQTQTTGMMLHLHIDSLTGLRKERKDQSSSRATDPEWGRVFVMLEDWKPGHIIQFGNTYVPPWKAGDVVWFDWA
Ga0211522_10026092F041247AGGAGVSDFYSVEAKTLKFDKEMLVDFYNTIDQSKWVHRQDKLPQYWPIDENNTFDRTHEFYKQLQRNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVERVEHTNNTPIIYSANYMHGTAKSLKNKNDRITLVVDIKFWFERVKIKYYEGTLFTNNKAFWSMA
Ga0211522_10026093F061913GGAGMFEQGNFYVKCHNIYYNQQWLRDVLDSLKPSDWVDGTSVTGVTWTVNECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPIDDDEERVVFSVNIHTHPTEMYKRAIDGTWLNKNTKNIGVSSE
Ga0211522_10026094F084452GGAGMINKLIWNKVEEMFYWNISVDSPINQLPFTMEFILACQKEFSMKVRDKEYPIHLGGIMDWHDKTMGDFVKEIDKQYQHNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGDALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPADDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGILLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVSTLADHVGLKINKVDYDHCNLYRPPMYRIFTEMTH

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