NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211688_1000556

Scaffold Ga0211688_1000556


Overview

Basic Information
Taxon OID3300020317 Open in IMG/M
Scaffold IDGa0211688_1000556 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15990
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.75%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F013783Metagenome / Metatranscriptome268Y
F024797Metagenome / Metatranscriptome204Y
F032332Metagenome180Y
F057396Metagenome / Metatranscriptome136Y
F064641Metagenome / Metatranscriptome128Y
F091005Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211688_100055614F057396N/AMVKVRVVYMNGKESQYDVDYPKAYIGKIIERENELMLDQKSVKEIYAGDKLIAKFNNGFLNELVLEKPKQTAGMGRYKGHTVPAGCDVGQYLVDDRMPNIKDKIKADEDWNEYQAEILHAQKMIKENVWVMDHTGGNVKITYS
Ga0211688_100055616F064641N/AMDPQEDKDANAIRHYKGTIKQFKDMFDDLAGGKDTNAYDSPVRQGFDVHPTRDPGVISPHWEEDHEDEKTQNENHVTNFKNFK
Ga0211688_100055618F091005N/AMASINLIPGFESFNENDNTIDNLNSMANTNLERIADYADMIKDRMSQGQTLDAWMYSKISDSVKNLNSVHDTMDGNDGVTEAEKHEFNPNETAERLKRREQQNIERFRAAQDREDPFAVQYYQLRISLDKIDLQRLKIQTSIHQLKQKYKK
Ga0211688_100055620F024797N/AMSEFFRTQMGRKLIDGDIPKLVNVLERIANQLEKKNKLEERKFVLEERIQKLTIKESNKN
Ga0211688_100055621F008425N/AMPKKDITYKQFIAHMDKGNKVYMKKPKSWQKVWFWWESKKEKWFLNKAFDKRTDGRVEPEPSVWITAKQMEGHMDHMSRMGYKYHIDE
Ga0211688_100055625F032332N/AMESNNNNGFGDDFIKSLLLTLEQTNFDEFMNLSYAVMMQSPSQVLKRRDSVDMKLDAINGMIKYFEEIEAYEKCTNLQKLKHLLFLNTSDDEDI
Ga0211688_100055631F013783AGTAGLILEGITFKLALDFFTFLKKNKITSTSIKVDFFNRVKHEYIDFADVAAMEKYYNTNYKPLDNCNLGDLVSISFFLAASDLYDFSTEFKAMDVTNNLKLETGSAYDRQRNSGRKVFIDRQIQLIKNAVTDYVKYYSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFTSVRDTSEFPYSDVKIEEFPPN
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