NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211507_1014220

Scaffold Ga0211507_1014220


Overview

Basic Information
Taxon OID3300020325 Open in IMG/M
Scaffold IDGa0211507_1014220 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1607
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8151Long. (o)63.5046Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F027536Metagenome194Y
F048640Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0211507_10142202F048640GAGGMQPKELNAHARCRYEPTRVQKQLECRLFGETFRSVAAAARYYELSLSTAYEWHHDGKYRETFPKTKRWDRWRNNNEAV
Ga0211507_10142203F005813GGAGGMKLYKNSNGVWAGTQRDARKYCGKVYSTVDVPTDKPGLLGFLNLNQVGSLSSSPTLEEVRTGEPTTSAMSWFRWSYDCMCRGQYEDAKEHLAKALEMSRKEKTDGD
Ga0211507_10142207F027536AGGAMKVDGWRYKVTPIDRVINDCKRRADDAWWDGNDEEARLHEQEQKLYEQDKEEGILWVPNF
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Institute for Fundamental Biomedical Research
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