NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211573_1031850

Scaffold Ga0211573_1031850


Overview

Basic Information
Taxon OID3300020327 Open in IMG/M
Scaffold IDGa0211573_1031850 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1433
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2016Long. (o)-116.696Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013467Metagenome271Y
F043619Metagenome156Y
F066274Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0211573_10318504F066274N/AMILELTREEIGWVKYALMRSSATLNGRDKEMTLKEERLLERIVKKIEKQEK
Ga0211573_10318506F013467GAGMTVTELKNWVWCEDCLEWKDAGEEVSFVNIEEDTFGKDLMTFECDKCENTNKNNIISSPTKPKGA
Ga0211573_10318507F043619N/AMTEEQYWKRTNGEVIAVADMNEHHAKNVLRKMLKKSRQRGLDVLEMRDKMRLISGMLDDIRSELL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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