NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211569_1028823

Scaffold Ga0211569_1028823


Overview

Basic Information
Taxon OID3300020331 Open in IMG/M
Scaffold IDGa0211569_1028823 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001971 (ERX555910-ERR599076)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1295
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.1468Long. (o)-116.6821Alt. (m)Depth (m)375
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071095Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0211569_10288233F071095N/AMSWINSLFNRNRTETIEVELLDETDKSIKIKYGIHTTYLPKKIITFDRVNTDRIIKVRLPLWLYRKKFI

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