NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211661_1076301

Scaffold Ga0211661_1076301


Overview

Basic Information
Taxon OID3300020333 Open in IMG/M
Scaffold IDGa0211661_1076301 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000959 (ERX556081-ERR598953)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)838
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9057Long. (o)-96.155Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029469Metagenome / Metatranscriptome188Y
F043443Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0211661_10763012F029469AGGAGMSNKPEHTSYFIEIIRRLKEMEVEFRKASNQPDDKVYGEMDGKIELMELPFPPEMFDRLSSDEKETLYIWLNRRNMPQA
Ga0211661_10763013F043443AGGLNDKLLELKRKKLQRQILYLRTELEETTFIFQDSLIEFEDEFRDYFKNQSNKDHKKVTTDPPEFDIPKEDVKNVFKKIAQKTHPDKLIKEDTLSSTYKEKVDMYKEALGSVENKDWSRVIEIAMELDIDVSDVKNDDSDYL
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Institute for Fundamental Biomedical Research
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