Basic Information | |
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Taxon OID | 3300020336 Open in IMG/M |
Scaffold ID | Ga0211510_1000176 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18624 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (94.12%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_023 | |||||||
Coordinates | Lat. (o) | 42.1659 | Long. (o) | 17.7285 | Alt. (m) | Depth (m) | 55 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020544 | Metagenome / Metatranscriptome | 223 | Y |
F095558 | Metagenome / Metatranscriptome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211510_100017610 | F095558 | AGGAG | VKYKGHNVEVLTQAKKEIIDRALEGFGPFNKGPFETSLSKMEGVFRKEIISYRVKDGYLYKETAIRDFSDGDYHDTVKIETLHSVEK |
Ga0211510_100017633 | F020544 | AGG | LKAYILTHDHPISRKYAKMCAETCDVIDLDWEYFEGWSNCTGRMAWCQTGIKMKFYEPMMHVDHPTAEHKANTCSAGHAAIWKKIAEGDDEVGIVLEHDALMYYKPDIKVPDNYLITLGYKVTDPENYAFMDARDNEPRQLIGINGHEGAHAYMMTKRTAQNLIYEIEQKGVMGCVDNAYFILNQRCTQMPLAIMSPTPAIGYLRKSTIWNDSAHRNYEFIESFSKYYK |
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