Basic Information | |
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Taxon OID | 3300020336 Open in IMG/M |
Scaffold ID | Ga0211510_1016346 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1976 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_023 | |||||||
Coordinates | Lat. (o) | 42.1659 | Long. (o) | 17.7285 | Alt. (m) | Depth (m) | 55 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003769 | Metagenome / Metatranscriptome | 469 | Y |
F005578 | Metagenome / Metatranscriptome | 396 | Y |
F011629 | Metagenome / Metatranscriptome | 289 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211510_10163462 | F003769 | AGGGGG | MQQLKTLTVKTSNKVESVHMDTLYVVINNCFNNLNVVEADCTSASYYINSANIFAQLQMLYCENESNDYVSLQSVMEVFANNITYYDESSLFTQVVKNTAMQNVKLENYVYLSN |
Ga0211510_10163463 | F011629 | GAGG | MLNTTQVKELVKQRFGGSLKQAYLNKCYSNKQEIADKRNMAFAVDGDAYKGVDLTALAQEIGCKRVKLHTAFLRGMQSGAWLRLQHVSYNK |
Ga0211510_10163464 | F005578 | GAGG | MQKNINTRELKHLCNFLTHAMNYKVELVSDEDFACDEDGGANIYDWVSATEELCMRTQCVLDNYFTHKDETLATAFETAIDYRYDDDCINEGISEHFFDYCKKHNILDFYFKQADAHDYDGEDANMRMYKS |
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