NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211510_1081796

Scaffold Ga0211510_1081796


Overview

Basic Information
Taxon OID3300020336 Open in IMG/M
Scaffold IDGa0211510_1081796 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)757
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_023
CoordinatesLat. (o)42.1659Long. (o)17.7285Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0211510_10817961F013187N/AKPVRNTWVYIYGDECQDIWEHFGFDFPNPDDRMKLKFVKYETREMQDG
Ga0211510_10817962F012581GGAGMAKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDN
Ga0211510_10817964F008925AGGAGMTVKNKLKISEVTLNLINKLKKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGVHDYGADKGKYQQFWHSDYVCHTNPKAFNPSKVEED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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