NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211571_1047361

Scaffold Ga0211571_1047361


Overview

Basic Information
Taxon OID3300020338 Open in IMG/M
Scaffold IDGa0211571_1047361 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001964 (ERX555920-ERR599099)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2016Long. (o)-116.696Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015023Metagenome258Y
F041256Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0211571_10473612F015023GAGMKTTFKHIDLNDSVDDFMNHLNNNMNKPDGYSYELSTRGSKYFKVIMNTRGSRSVYCFINKRNGEILKSAGWRAPAKGARGSVLIPKSYSHSDWSGGWLYKIFGNVYNTIG
Ga0211571_10473614F041256GAGMNLNEYLIENDRHIGDVVILFSVGAAVDKVSGDTFPLMADNTIGFDEPFNLMDMDISYDSEEWYNTLNNGDKKVVDEVMDNLSYENYVDSMVGEPEYLGNR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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