NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211605_1019099

Scaffold Ga0211605_1019099


Overview

Basic Information
Taxon OID3300020339 Open in IMG/M
Scaffold IDGa0211605_1019099 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000674 (ERX555929-ERR599080)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1543
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.1552Long. (o)-140.5284Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061903Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211605_10190993F061903N/AMKGTNMELKNFRVGYYSIREDVCSTFYQKESAEKLAEQLHTVAPTHKDAQYFVHLAQWNLIDDHWGVDGYGDPLCTRISGKENTENLEGLFLHMKGCWHYSDNGIDWDPISECFLEKVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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