NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211592_1056599

Scaffold Ga0211592_1056599


Overview

Basic Information
Taxon OID3300020341 Open in IMG/M
Scaffold IDGa0211592_1056599 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001121 (ERX555908-ERR599066)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)822
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Candidatus Poseidoniia → Candidatus Poseidoniales → Candidatus Poseidoniaceae → unclassified Candidatus Poseidoniaceae → Candidatus Poseidoniaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.895Long. (o)-142.6228Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040846Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0211592_10565991F040846N/AGYPTGGIHQEGMPLSSIMGILDILILRPWKLRSAKKYFMDRFGPAFFMRPAYCVDCNKKPIKIKDADLFGGRAGMNAEDPICPECYWVMNSSSWERFTVGFLDGTFTVEEFENTERKTYMSANFVKETLNQNG
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Institute for Fundamental Biomedical Research
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