NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211626_1038645

Scaffold Ga0211626_1038645


Overview

Basic Information
Taxon OID3300020343 Open in IMG/M
Scaffold IDGa0211626_1038645 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000475 (ERX555975-ERR599174)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1253
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.0263Long. (o)4.6977Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019151Metagenome231Y
F054095Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0211626_10386451F019151AGGAGMIVANERAKDGLELFDNNGAQAFEMKNETLRMCADEDGKIWHSTRGLTIRDADGNALFTLSWSENGVCGSLYDDELTVEIEEEF
Ga0211626_10386454F054095AGGAGMIPQWKMNGKDMRFDGSIEIGVVEVRDLFDDLVVTLWVEQEDSGSITVKSLGGIGNGRYKVQVLSREKPVEEGEEWKN

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