NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211570_1001946

Scaffold Ga0211570_1001946


Overview

Basic Information
Taxon OID3300020344 Open in IMG/M
Scaffold IDGa0211570_1001946 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001964 (ERX556104-ERR598987)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9576
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2016Long. (o)-116.696Alt. (m)Depth (m)40
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009558Metagenome316Y
F011155Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0211570_10019461F009558N/AMYRKSWEARHYWVNQFGIIEHDIFAHIPPQHYVVKWKEGFERKEKHFDNKKESQAFFRTVRKTATDFIRIVKWH
Ga0211570_100194613F011155GAGMLDTVVNSVEHFDTTMDGLYIIREGAFGFLTESKESPYPWMLAAAAVAGALPLALLFFGFGWIECARETVQCGLVSIGG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.