NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1000296

Scaffold Ga0211504_1000296


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1000296 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25838
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (37.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058511Metagenome / Metatranscriptome135N
F076587Metagenome / Metatranscriptome118N
F083373Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_100029613F076587GGAGMAHAQLICYSYNTGSDLLHVQAIVDDAVQVLPATHLDPPEFDSAHCQAVILWDEPLDHTNAPTQEQVLRMLPWITDWCVIPPIEFDD
Ga0211504_100029616F083373N/AMSTHPFDTSTFASVKLKNVPSYLQNDAADYNLRVAAWFDNYAVNAAQVDRAMADQEKLWKMRSAEGWEGDEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRLDDTGWYSPEGQHESEWTGPLPEYTLL
Ga0211504_100029620F058511N/AMTRYALRTTHGTQTLYLAAYYANFPKNNGIRLTDKAEDACSYVTIEKAFQVARSLEDSMGCVPSIVEVSY
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