NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1008868

Scaffold Ga0211504_1008868


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1008868 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3120
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015151Metagenome / Metatranscriptome257Y
F022016Metagenome / Metatranscriptome216Y
F060786Metagenome / Metatranscriptome132N
F076507Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_100886811F060786AGGMVKYVLSQKTGEWIPIGPEDMDYTRYGKTLDELIEMRDAINKIVYGTKRFKT
Ga0211504_10088683F022016AGGAMAFDMYKTHKLADHLESEAYGHCQWAISAFYDLELEENEYGYEQDVYEVLTKDQIEEIDAYISEHTAENMWHEPYSISCLNTIVDRWYEEHEGDD
Ga0211504_10088684F015151GAGGMITLKNGLIISADNNGFESINHLTSKIDKGSFTKFNELPDIFYKEMDTDDRTLLTKIDNPELSTILQRTKQYGI
Ga0211504_10088687F076507AGGTGGMSLILSIAEAKEKGMWRLVEQLERDLERRQLLKMAPLEDVKEKDVNNVWEEPDDWDDL
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