NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1009442

Scaffold Ga0211504_1009442


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1009442 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2997
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F000918Metagenome / Metatranscriptome834Y
F005454Metagenome / Metatranscriptome400Y
F007772Metagenome / Metatranscriptome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10094421F000918N/AMYKTNQQAWNEVMSGIKESERRTEICIEMFGQENLIGLSNDQRELFWQSV
Ga0211504_100944211F000352N/AMRNIKLTENDCTFVHYVLRYYANHTENLDSDDKDEIYEVAAKFK
Ga0211504_10094425F007772N/AMCTKSYTLLKISWNLFDTDFDKLNDEQKSKVIDIYYDFY
Ga0211504_10094426F005454N/AMRIIKHYNSHFPERETYKCTIRYTTKFGTLDEVNQWRDDQLKNEDYYKSLEESNTKAAGLFYQTLTYKGD
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