NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211600_1006800

Scaffold Ga0211600_1006800


Overview

Basic Information
Taxon OID3300020348 Open in IMG/M
Scaffold IDGa0211600_1006800 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000676 (ERX556089-ERR599161)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3934
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.067Long. (o)-140.6346Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021867Metagenome217N
F038425Metagenome166Y
F056907Metagenome137N
F061287Metagenome132Y
F074138Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211600_100680010F061287AGGAGMDKDDRETMIKSLMKLKLQRKLLDKLTDTEIQRLFSVLKGYSI
Ga0211600_100680012F038425GGAGGMEGDRSEVHCPNCDKRMYWWGYASSYTGDGSSEIGLGCENPKCEGHEIMPEDVYDAIVTEEERIDG
Ga0211600_10068002F074138GGAGGMDWNKLYIHPSEDTTDEDIRDFIEWVSRKGERLGFKVELKWSNKAESGSTDIMSTNPLDKSDETH
Ga0211600_10068003F056907N/AMTDNAYYIPGETGSGPKMPSGEYEAIITSLEMTENVKCGGFIADIFKPVYRIANSEYENTDVRDNGVFRYKEKAGYNFKPSRNWGFAKFCGILGLDNEVNGKVTLPYLELDMIDGYKVVIDVSYKNFVNESGNPVRYPVATLKKKLGEVPF
Ga0211600_10068004F021867GAGGMDNNENVNWDKVNRGKVRYGFALELYKSGGVLKPSEMGKIEGFVDYVMEGVGDDLTVNKTSDEPRSPLMSIDECKEVVKTETEGSRAFVKGMVHMDAEGLKEPDLKRVLDALESGKITMVNLQDSLDRIQSIKDSYKK
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