Scaffold Ga0211511_1006557

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211511_1006557

Scaffold Ga0211511_1006557

Overview

Basic Information
Taxon OID	3300020349 Open in IMG/M
Scaffold ID	Ga0211511_1006557 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3313
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_023
Coordinates	Lat. (^o)	42.1659	Long. (^o)	17.7285	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001139	Metagenome / Metatranscriptome	767	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211511_10065578	F001139	N/A	DPWYRIIKEKVMKIFKNDLTHYFIRPHDQLPDAYLRSCKKFFTELSNKRQASSNKPQAFKLHKPGQRVKNRFNRKI

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