Scaffold Ga0211511_1133109

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211511_1133109

Scaffold Ga0211511_1133109

Overview

Basic Information
Taxon OID	3300020349 Open in IMG/M
Scaffold ID	Ga0211511_1133109 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289006-ERR315859)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	563
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_023
Coordinates	Lat. (^o)	42.1659	Long. (^o)	17.7285	Alt. (m)		Depth (m)	55
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032076	Metagenome	181	Y
F033630	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211511_11331091	F032076	AGGAG	MSCEVNTVWFERAYEDYYDDLKAKGLSDQEIDKFITDLFYNSAE
Ga0211511_11331092	F033630	N/A	MINNNERTTIMKTCKECGCTPKNDEWAVNSNEHCMDCEQEYNDYYNACMENWKEQQATFNEENQS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.