NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211689_1021950

Scaffold Ga0211689_1021950


Overview

Basic Information
Taxon OID3300020358 Open in IMG/M
Scaffold IDGa0211689_1021950 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2096
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1906Long. (o)-58.2682Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002915Metagenome / Metatranscriptome521Y
F004166Metagenome / Metatranscriptome450N
F007087Metagenome / Metatranscriptome358N
F093220Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0211689_10219502F007087AGGMKKLLLIALTIPNFVLAEDFKLECEGEVSTFRNDVLENTSKATKSLQVKDDSIVIDSMTYKSKKFDYGAIKGSSKYVKDDVQIIVETTQVSNECDTALLSVKLNRSSGMIESTSKRIGACDGSSFTTSTKFMGKCK
Ga0211689_10219504F002915AGGMRKLLLLLLTIPVIGQSEETFTNEQGLKIEYDTPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDKDMVEKLEKKSKGS
Ga0211689_10219505F004166N/AMKTLLLLILVVPLISCSDHQTNDSWGSYATNKETQKQEFWFTSYKTRDACIADMSWQLEGRDDPNKKRISNWHTKPYGCHFMSNNKWLSMYYYLVYRDEGLGCLWESSNPNVRIKYSVTLKTFVNAPEQGRCILGD
Ga0211689_10219506F093220N/AELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLTTTINNACNVKIN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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