NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211712_10000001

Scaffold Ga0211712_10000001


Overview

Basic Information
Taxon OID3300020360 Open in IMG/M
Scaffold IDGa0211712_10000001 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)250519
Total Scaffold Genes276 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)185 (67.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_070
CoordinatesLat. (o)-20.3976Long. (o)-3.2009Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016406Metagenome / Metatranscriptome247Y
F023113Metagenome / Metatranscriptome211Y
F092019Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0211712_10000001123F016406GGAGMRLIEFYNPEFDEFQRRNKEDSRKPKMTLETLSKLRKAREIKRAEEIEHGKFQKVMYASPSADAGVGGII
Ga0211712_1000000137F023113AGGAMPKKPQPDKMPKPYIEDGNIEAHIIADMLRIESITAEIREFKETTKSRLDKLENWIISIVAITVTSLVSTVITLVMRLI
Ga0211712_1000000189F092019GGAGGMDSMFLFFLIFILANSYFMYKAGERAGKFTGMISITQFFKQKNALKDKNSILGFKNWPTVIQLMYDSPDPEQLFED
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