NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211712_10006795

Scaffold Ga0211712_10006795


Overview

Basic Information
Taxon OID3300020360 Open in IMG/M
Scaffold IDGa0211712_10006795 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000459 (ERX555918-ERR599165)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3205
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_070
CoordinatesLat. (o)-20.3976Long. (o)-3.2009Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F003154Metagenome / Metatranscriptome504Y
F024562Metagenome / Metatranscriptome205N
F042284Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0211712_100067952F042284GAGMNLAAMIMFMIWCSIVFVAIGAWAFMTITRQDKSMYSWDDADDDTFQDGVG
Ga0211712_100067955F003154AGGAMDTLSYMMNLVGGVYEDERGWRHFRVPNKTYDIRMHPMTLEWECSCPAYKFSRGNKTCKHIKIIQNN
Ga0211712_100067958F024562GAGGMAILFEKNFTDPNEKIVRQFTNCCGASDKGTEYGVVCRGCYSPIEGYMADGDDAPEEFENYIDNDSVLERFREFVSQEWNTYMEWHDYTIEKIMKERKND
Ga0211712_100067959F002747GGTGGMANDANRFFVNVSLEIYVPDQGCGEQALKNENQDAEWFANEICSQIPKAINKNFQHSERPYSVNWAHKGEVERG
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