NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211531_1027959

Scaffold Ga0211531_1027959


Overview

Basic Information
Taxon OID3300020361 Open in IMG/M
Scaffold IDGa0211531_1027959 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1717
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)18.9918Long. (o)64.5757Alt. (m)Depth (m)340
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F015741Metagenome / Metatranscriptome252Y
F073428Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0211531_10279591F073428N/AMTKEITTNGSTAVITTDTPMEQTIVIEPEPLSSVSFMGAEVQTSSVWIGLMVVLALVLITRHVLKK
Ga0211531_10279595F002078GGAMFEGQGWFAIAGQIVLVFTAITGALPDRFVQKIPVLRTLWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM
Ga0211531_10279596F015741AGGMFLTGCSGFPIVELIPPAFNFALGFYDHNDYYSKECLWYNEIKLNDATKKWLLESNPPEIVSKDLSKVSRNNDIYREVCKKDKSMVDKIKDKADRVLDKTLMATREKEDG
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