NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211488_10000320

Scaffold Ga0211488_10000320


Overview

Basic Information
Taxon OID3300020362 Open in IMG/M
Scaffold IDGa0211488_10000320 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001234 (ERX556035-ERR599049)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25727
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (80.39%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_033
CoordinatesLat. (o)22.1283Long. (o)38.1967Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002444Metagenome / Metatranscriptome558Y
F014085Metagenome / Metatranscriptome266Y
F022423Metagenome / Metatranscriptome214Y
F023355Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0211488_1000032015F023355AGAAGMPLPGAYVNRSHTLGQYCGNCKHYINNYCIAFKEQVAPGGWCKIWSGIEIRST
Ga0211488_1000032022F014085GGAVDSLSPLREEALKRAGGRCEWAYCTDNKWLELAHIQGIGMGGNKKRKFDINNVAILCKHHHDIYDGRQRVGTSVAYRDLLKGYLKRESTII
Ga0211488_1000032027F022423AGAAGMQDLNFITQTVAEMTSKVESVETVNKIIGTANQYAQVKKFPASKELWSDEQVGAYLDMIERMLDLPTEFTQAEFETMSIQEKLSAAGIETIDITNGPQTPEGIVGEVVNQMAEQNKYRDDLKCPYCQQMVYDNRNSKRSDKSPDFTCSTNNPAECGGHTGKWRKSWWIDNSDIPEEWGI
Ga0211488_100003204F002444N/AMSMLLMLKEGGSLGIDTIGNLPIDEDIDLLPDAGGSGTLSYALRTSYESLSVTSVTQTQVRAIVLGDS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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