NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211488_10013572

Scaffold Ga0211488_10013572


Overview

Basic Information
Taxon OID3300020362 Open in IMG/M
Scaffold IDGa0211488_10013572 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001234 (ERX556035-ERR599049)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3234
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_033
CoordinatesLat. (o)22.1283Long. (o)38.1967Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021120Metagenome / Metatranscriptome220N
F028529Metagenome / Metatranscriptome191N
F034958Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0211488_100135723F034958AGGAGMKSEVDQIIDNLEFCIETIGLNDEQTGEVLAATNELGVNVEYFANEFMETSSRQVHDDDYLNIALFNAMYWEF
Ga0211488_100135726F021120GAGMKVFTIQFTEDELTELENVLDQHVYAEAIENKGSEGTIGIIHNRILDVHYQNSDGIVPVVKATHKHYRKDLDLL
Ga0211488_100135728F028529GGGGGMRLSKYLTENLETKTVNLTLTFDERSELLKHLEMFDEHIDQLHPLVESVQDKLLGID
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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