NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211506_1063859

Scaffold Ga0211506_1063859


Overview

Basic Information
Taxon OID3300020365 Open in IMG/M
Scaffold IDGa0211506_1063859 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000034 (ERX555943-ERR599143)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1042
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8151Long. (o)63.5046Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009890Metagenome / Metatranscriptome311Y
F022185Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0211506_10638592F009890N/AMVTTQYSNHLRNLRCLFENAKDFVVTRKVDTYEYESLEKMILEDNIRYSEVMEIFTDKTYRDWFYDRNFRGKEFNITRFSSD
Ga0211506_10638593F022185N/AGASAPLMLMDFLHGILFFIIGCTVTLIGFFIAFLVVRYNIKKEKEKLEKQNEYKVHPYGDDTV

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