NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211709_10055343

Scaffold Ga0211709_10055343


Overview

Basic Information
Taxon OID3300020369 Open in IMG/M
Scaffold IDGa0211709_10055343 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000446 (ERX556016-ERR599044)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1268
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_070
CoordinatesLat. (o)-20.3356Long. (o)-3.2659Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000423Metagenome / Metatranscriptome1156Y
F017323Metagenome241Y
F081433Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0211709_100553432F017323N/ALTYLGLTFKILDMFNNKGESKMNTEKTKVFLVIKKTVWNDGETWFDVSEHSNSKERAEQCMTALNTLKSDEKVSYLICEVDHANK
Ga0211709_100553433F000423GAGGMQINKAIFYIKYFAKKHDCEIERKATLDEDCFEGKHKKFGYPYKVYVDVQATEERNNGKPQYRTATHKWEINDHQTL
Ga0211709_100553434F081433GGAMTIKHFKKLPHYLQPRIISAVSFIHTASPNINLAQERIAKVARVLSEKELRYVLSLLVLDKLLDMVQSSDEFKSFVPTKKTLQ
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