NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211709_10117197

Scaffold Ga0211709_10117197


Overview

Basic Information
Taxon OID3300020369 Open in IMG/M
Scaffold IDGa0211709_10117197 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000446 (ERX556016-ERR599044)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_070
CoordinatesLat. (o)-20.3356Long. (o)-3.2659Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F015741Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0211709_101171971F015741GGAMQLKQKFGIGLVCLTFWTGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESSPPEIVSEDLSKVSRNNDIYREVCKEHKSMMDKMKDKADRVIDKTLTATEEEEDG
Ga0211709_101171972F002078AGGAGMDIAAIFEGQGWFAIAGQIVLVFTAVTGALPDRFVQKIPILGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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