NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211500_1001421

Scaffold Ga0211500_1001421


Overview

Basic Information
Taxon OID3300020371 Open in IMG/M
Scaffold IDGa0211500_1001421 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000003 (ERX555978-ERR598991)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9446
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → unclassified Ostreococcus → Ostreococcus sp. 'lucimarinus'(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_034
CoordinatesLat. (o)18.4017Long. (o)39.855Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087146Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211500_10014218F087146N/AESTPLVIDASETSSIAYGDVHRPRRRRSAMTSVAAVGVISFSVGILLILAGGRSSDEHARVGGILNWVFRGRVRPEVTFTLDASWIDQRLRAANPDFFTSPISDGFILRHNYNSHLFFPRKNMVKMTRIGLRKWTVTTRDVNYEYGFALGNEAGEILREIGPWVTTKQHGPKSGNGEFMDACTVTFWPYRNRLIPQKPNAAPGPLNVTACFASCTKTCELPNAPTPLASLDASQYTGGNTWGNAQISCNLGSQTTYNSTMNGMYINGNRQSVITCPYEIGPARYPNLTMEVVFQLDTTYDPTASYGWIFGHDDGGYDRSFIISDTRFGGGIGSGIGAVYDSGAATPSNGVWHHGLAVFRQGIVDGSYTALDGAISPVKATANNNEGEPDFTVGGLANDFGFPHEMKGWIRYFNFYDGALDESQIEAMYVRNTPWP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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