NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211683_10016906

Scaffold Ga0211683_10016906


Overview

Basic Information
Taxon OID3300020372 Open in IMG/M
Scaffold IDGa0211683_10016906 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000787 (ERX556133-ERR599090)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2528
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.1363Long. (o)-49.3331Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017045Metagenome / Metatranscriptome243Y
F017558Metagenome / Metatranscriptome240Y
F072753Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211683_100169063F072753AGGAMEDNKENDHIYLSKIKYDCLDFISTFIKQYKFSPTYKEIAEKFGFSRARAGAICAELFKLGLISKGLAAHRKIRLSKKQISQIPNLSFNREYSTMEFRR
Ga0211683_100169065F017045AGGAMARSNSLLRRYAKLQKLHGEIMQKPKENTGQCVHSLKAFKSYVKTFRQIVLVENGDATFKFTQL
Ga0211683_100169068F017558AGGMFFIIFKPKDIFRSYSNQIFATEAEALDWGKRSFKRKDIWEVVPYNSENY
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