NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10000429

Scaffold Ga0211477_10000429


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10000429 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25762
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (52.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003612Metagenome477Y
F080524Metagenome115N
F101908Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211477_1000042915F080524AGGAGMNMKQFNEELLSTDWRRNRPQKFGFRMTDQKTIHKHQRLLPPELVKGKTILDIGSYISQTGDWCLNHGATKYTGVEIIKEFADRGIELMEKYHTGENWNIITASLEDYFDQHKEKYDIIFCWGVSFSQIDHAWFIKNLCDRADHIALNWRHPKVMWNDNEHEISDELWKKLEYDIPYQEWQEDEMTQTAGKNASVYCASVHTSLKAVQLLMRMNGFTSNTDSYEFFKKVMPEDIGMFRDKNRPGFFVLEGTRDKAATRPNLFNEMYNKPEVWNDKWIDWS
Ga0211477_1000042917F101908N/AMNPLDIPHWVVGGKHIYNQLETWEEIVKSKREFRFYFHDHVYDRYDWSVEPKQSYDELAHLRCLQLRQKYRKLSLWYSGGRDSHHVLRSFAQNNIPIDELLLLHWKMNPMRTAEYYSWQLPLAKKYKEINPNVKITTVDVDSKVYAKYYGSKKPESKFFASDDGLYQPSDFEWHTVNLCNIRDSSTGVIVALEKPYLYLSDGKIYHRFVDKTIELYRGSISEFEMFHYAPEMPEFYIKQCHILANYIKQHYPNKNQDFFDDFIEKPFGQYYSEFCTACGRGPAIDENEPCNNGKNKYNGSHRLFDKIIDVAKKDNFNSYKIWQDSVKYWTTNMPEAFGKKNYREGGTTGIRSNAKYITDYIRR
Ga0211477_1000042931F003612N/AMATPNNFKVTDAIGSTDNFAGAEVKFFHITLIQSDSSALDIRTELDYDETMHNLIRTILQRGTILYQRIDNAASGRVDITMERPGWTAATLQTAIRGMGDSVGVNNKSVSLSVVAETELKLDNS
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