NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10000653

Scaffold Ga0211477_10000653


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10000653 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21106
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004748Metagenome / Metatranscriptome425Y
F052276Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_1000065310F052276AGGAGMYFHPMQEEINNLSDEDISNRIKELSKKVAIARRGRNPEMLMNLQNVLMTYQDAIRQRRVESWHANRKKLRNEPDLGDLINIE
Ga0211477_1000065317F004748N/AMFLETLKTMRLYERQSKLGIYHTFHRKNTVYVFRCDACGVTFLRPRSKVDPQRASNDYKHVCSYCDTKKFAQEVGVNMRNIYKIDASSTLVL

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