NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10001439

Scaffold Ga0211477_10001439


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10001439 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14168
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (39.39%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001993Metagenome / Metatranscriptome607Y
F004453Metagenome437Y
F004764Metagenome / Metatranscriptome424Y
F014388Metagenome / Metatranscriptome263N
F049690Metagenome146Y
F090509Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_1000143910F001993GGAMNSEQLRYKMKNLDELCPNRSVTDDQQFHELYSKLRDLIEDTNYNIDIVDLYTALHCAMEDFDMYE
Ga0211477_1000143911F014388GAGGMSSLHHENILEDCFEVASESFRVNNKLTHEQLEELLSFSKGTYDAICSNAYKLFQDRCQ
Ga0211477_1000143913F004453N/AMSVKFTEIELETIANAMDDYINYDDENLNTESLFGGLSVADRVNSIQTKIDELLKLMETN
Ga0211477_1000143916F004764GGAGGMNFSLEQNVDILSAYHVERFTHLRDNKQYQDADAIAQEYICNGEVEHDDYKWLYVNYQFKEAI
Ga0211477_100014394F049690N/AMPTISTNKELLNVINEDVENVKQWSQMPPISDELYQELVKEFNNERHYFFNDSYNLED
Ga0211477_100014395F090509N/AMQLLTRREYNLILRSLDNYNLYMNNKEKELSETLQDKLYYNLYNPKDGIAQTTTELPDLDNKIKSLNFNR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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