NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10002899

Scaffold Ga0211477_10002899


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10002899 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9767
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003693Metagenome / Metatranscriptome473Y
F028358Metagenome / Metatranscriptome192Y
F097158Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_1000289913F003693AGGMIKSKTALIDISADDSNSLGVQTEGMLLCGVQFPAAMTGSTITFDFAMDNSTWVDVKETDGTEVSYTVSTGDIVRVDPSGWAFASNGYIRVTSSGNEAADRSLTLHFRHS
Ga0211477_1000289914F028358N/AELVKGTVDIAGAIIPRDRNVAGVDIDTIVTPFGSIGLMVIDPDVLPDNTAFILDLAYIQPVFTNIPGYGTVFVRDIDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVA
Ga0211477_100028994F097158N/AMDYLVGFIFGYIVKEIYNLLKYLSTSETIILDNNFDEDWDWISRPEDLP
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