NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10003994

Scaffold Ga0211477_10003994


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10003994 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8116
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005279Metagenome406Y
F010648Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_100039942F010648N/AMMHYTFHHIPKTGGSTLRIRLDDRADRKQISKLDYAVGHNTTHRTPGTHFVWLRHPLYRDISQYNYDMGKGDIDGDSFQEHCGKLNGNFMILWLYTNYLCKDKEDAIDVKYNAVRMCLRNTFKKVFCLKNFEQSWNEVADTLNIDREPRQNTNRSLQDYKKYISKEELDEQFISWHENHNKLDYQLYNEFCA
Ga0211477_100039945F005279N/AMNHRDRMLKWIDDLGLIVIHTEIKPYGKGTRRYMVGRHTEEPTKSHQLKSGSWQMSEGKQEWLTPEPLTGVELEEWLTEYSNSHQ
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