NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10019642

Scaffold Ga0211477_10019642


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10019642 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3041
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026287Metagenome198Y
F027814Metagenome193N
F056902Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0211477_100196421F056902GGAMDKYLKWVATVFLMIGVGANSLAIYPAGPLFTLAGGLTWLIVSIMWKEAALI
Ga0211477_100196422F027814AGGAGGMSKLKFNDLPKILDWIKEPSHAGHLFIVEQTLKSVKEDQFKVGTKVKFGRANGMKRMGTVVKLGPKKAVVDCSGAKWRVPYDLMDVVEE
Ga0211477_100196426F026287AGTAGMGKNQNNLVKKPLFYVIFSLILFTFCSGCVNQCKIRPDLEKIGDSAVENIENLAETNLKSGKLVCNY
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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