NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211477_10052903

Scaffold Ga0211477_10052903


Overview

Basic Information
Taxon OID3300020374 Open in IMG/M
Scaffold IDGa0211477_10052903 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1600
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030292Metagenome / Metatranscriptome186Y
F046473Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0211477_100529031F030292N/AFKKNDRVKKIFDTVKYIKQYYSYFNEMYRIYSKNLRNDYLFAMALQQINGFTGYVKLPLALPTLPPDCEVVKITDSGIVWKHGDQISYVEDQDVHVLNKEMANV
Ga0211477_100529033F046473AGGAGVSAGCGTTTTRSYMPGLFEALKNMPKREPKKFFITVQGVEHEVTLERKLWAQQHGEGNLIVKDGKIVVKPKPKPKTRYSVLKKASKGYAFQDSDIHWPNALVEGGETWQTEYE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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