Scaffold Ga0211477_10095680

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211477_10095680

Scaffold Ga0211477_10095680

Overview

Basic Information
Taxon OID	3300020374 Open in IMG/M
Scaffold ID	Ga0211477_10095680 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1100
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_030
Coordinates	Lat. (^o)	33.93	Long. (^o)	32.7322	Alt. (m)		Depth (m)	70
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005720	Metagenome / Metatranscriptome	392	Y
F051469	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_100956802	F051469	AGGAG	MIEKFTVEINVGDVVEIGRMHLANQEVKAIEIDKWGHPVVVLESGRKRGLFNFRLKKLIPTDAKRMQEPADVVMTKEQWAEAERKIAEVKAKQ
Ga0211477_100956803	F005720	N/A	NATANMSRRQSFNGKGLTFIEMMFDDEVTTTATTPDTKASVFNDMSRLVGTFGTILAQSYTLGAKATEKDAAAAASIVEDELCDYYSFIVEGTPGQFNAADSAGDINLDPDQANASDPGVIAAAEADIETEILARISGSSDSAGGVHVDVRYLPADGVTSAGVDEVYGVNSARVNA

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