Scaffold Ga0211477_10157544

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211477_10157544

Scaffold Ga0211477_10157544

Overview

Basic Information
Taxon OID	3300020374 Open in IMG/M
Scaffold ID	Ga0211477_10157544 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	808
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_030
Coordinates	Lat. (^o)	33.93	Long. (^o)	32.7322	Alt. (m)		Depth (m)	70
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012626	Metagenome	279	Y
F066696	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211477_101575441	F012626	AGGAG	MRIGIDCDGVLRDLITCITDTVKVTHPQHADKILEPTSWDWDQWLPFWTNDETEKYVFEDNFLDFF
Ga0211477_101575442	F066696	AGGAG	MDEREIIYERVGNYTKYKLVEMLVEKHKGKFKNLNQIEELADEILQVLSIAGLKHYNDLREEFNADRD

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