NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211656_10003980

Scaffold Ga0211656_10003980


Overview

Basic Information
Taxon OID3300020375 Open in IMG/M
Scaffold IDGa0211656_10003980 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6482
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2771Long. (o)-85.2995Alt. (m)Depth (m)480
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F002715Metagenome / Metatranscriptome535Y

Sequences

Protein IDFamilyRBSSequence
Ga0211656_1000398010F002715N/AMLTMPEDDQLQSVKLEVGLLKNEVETRGKQIETLLQKLDLTTDKLSLLTVQIIKLNTRQEDYLRHTTSTSAEFKILHTRIGDLYDKQLVMQKEIEERIDRLDQYKSKLMGMIIVVGGFVGALVAATTGIFLKD
Ga0211656_100039808F000245GGAGVKPFGTYLKEKSSRDKLDKYVSDEIKKRKLARHPVNATDDIKMRRGKPTFKFPSPTGDMVIYVWLRPMAKPASKNTKAFNYQLEDK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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