NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211682_10000393

Scaffold Ga0211682_10000393


Overview

Basic Information
Taxon OID3300020376 Open in IMG/M
Scaffold IDGa0211682_10000393 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28143
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.2658Long. (o)-49.1658Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043629Metagenome156Y
F071649Metagenome / Metatranscriptome122Y
F079229Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211682_1000039317F071649AGGAMTNYTTDAQLDAQGLKHEEWLEDSMSAQRAMFNTARAKGVSIMAWKDTEFHDEHHYIVMAQNHKLEFVTWTWANGGFHNGHYYNDNEMQAWADYKERT
Ga0211682_100003933F043629GGAMANSTINITIDVLNETVMLEIEVIWHMSVAGELTIDDFYGYHFDIKTGEYDRIPPWLHKIIETTYLLEEEYLDTIHLNCDENTY
Ga0211682_100003939F079229AGGAMDILEKLDAVQYDFNFQHAITTNDADLLVASLSDHGVLITIAKANELIVNLKKVGASYDN
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