NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211527_10010785

Scaffold Ga0211527_10010785


Overview

Basic Information
Taxon OID3300020378 Open in IMG/M
Scaffold IDGa0211527_10010785 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3440
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032285Metagenome / Metatranscriptome180Y
F041241Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0211527_100107851F032285N/AVNWDSVHISDKIHWLKDVLMNSTEYKDGDEHIINALITGSQNTFSGEMGFSIQPHHMKFMRELWDEHIETQKDNSIILKLREKS
Ga0211527_100107859F041241N/AMKLDFRSRTTYTLTQVTEPITLDSEDFRNANPPYEGETEEDFWKYISEHLSDWDAEEYLDNNEDNFSEDLKDDLWNTFIEYPTEEMFDSRTKSDEIIMEAGKIDKEYTKYAGFNAKYNNDWNG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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