NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211527_10031744

Scaffold Ga0211527_10031744


Overview

Basic Information
Taxon OID3300020378 Open in IMG/M
Scaffold IDGa0211527_10031744 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1741
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F012584Metagenome279Y
F016820Metagenome244Y
F037769Metagenome167N

Sequences

Protein IDFamilyRBSSequence
Ga0211527_100317444F037769GAGGMSYIQTQTDKEDEKLLRRLLSEKMPEKDADKIISHVFSNLIKWTYEDAVLHLTQVFNFTEEESNQLIKEYDILSSTTKEVIMNPPPNFNATAPNDVKDYSANLWQARKCLSDAKKLINATALTPRDYENDEDFHEALLHRLHIAEHFISINKYIDEHLDFAKAHIPPQTP
Ga0211527_100317445F012584N/AMKLKPYLPENTFILSEDSLPKEHDTDRFGKIMVFRKDVGWSVIPLTDAVQFLAMKHTHWTFTPDTPYD
Ga0211527_100317446F016820N/AMTKKEFSYIVFSSCGDNVQEIHGVYKDLEGAAYGAKAALSTLFPNHGDKAEIIRCEIISTEEARVTYEKIKPKDIFEKCEDGFCPMPTPQSQEVS
Ga0211527_100317447F006793GAGMTNTRSNNEQMEERVNYAADQLAKGKRAMDISKKLASKYSVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARDQENLKEQTRSTGGMVKMVSLLTSIDQVGSWDNASDQYLFKNFREVKKK
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Institute for Fundamental Biomedical Research
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