NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211527_10042627

Scaffold Ga0211527_10042627


Overview

Basic Information
Taxon OID3300020378 Open in IMG/M
Scaffold IDGa0211527_10042627 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1447
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020879Metagenome / Metatranscriptome221Y
F087182Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0211527_100426273F087182N/AVGQYTDKINAIAEDFATIDYYEKVSALEARDGMMILHYYHGGKKIEFSRDSEYEGTVGKAGEVIELPPFDKDYIRLKEKYESETWGDQIGKWWKKITNLKYNPSKWS
Ga0211527_100426274F020879AGGAGMTNKQKKQVNNFIQTSLKLVGCSLLFLGMTMALGVDLNPHMELTAYILLFTGTILMMTHSFRGHDHMFLLVSSAGFLLVGHAFLETETAIQIANNYGIALSEEQGWFAKYGKLFVEILKAVV
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