NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211652_10024237

Scaffold Ga0211652_10024237


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10024237 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1818
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042637Metagenome / Metatranscriptome158Y
F059370Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100242371F042637N/ADKAINHYLAVDFKNQDFKDLIAEYDTDKIAEATIARNRKYAQQLSDMVDAGIKVKTDVKQRISVEDFVQKILEFDHNDEECKEILFTMKVQMFETKKLKDSKDKEQKARLRSARTPMDLLIEYKKIND
Ga0211652_100242372F059370N/AMIDVYCVNVGTKYDRDFDQRLKDSVAKHLTLEHTFTCLTDKPEKDYDKPVTHPELRGVFHKLSLFQFTGNCLFFDLDILINDNIDFLANEFDGLTLVDSSPWKQQSLKEPVKFRITQNTLVNSSIMRWTDETKVFERFMKHRDLYVRLYSGIDRFIYNEEVKYKYFMGDAISSWQEGVKHNTILLHNQKYV
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