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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020380 Open in IMG/M |
| Scaffold ID | Ga0211498_10001348 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8800 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (35.71%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_057 | |||||||
| Coordinates | Lat. (o) | -17.0283 | Long. (o) | 42.7449 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020879 | Metagenome / Metatranscriptome | 221 | Y |
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211498_100013482 | F020879 | N/A | MTRKQKRQIHGFVQTTLKIVGCSLLFLGLTMSLGISYNPHMELYAYLMLFAGTVIIMVHSLRGTDHLYLLVSSAGFLLVSNAFLGTETAIMLADSYGIALTEEQTWFAKYGKLFVEILKAIA |
| Ga0211498_100013485 | F089156 | N/A | MLIIQFDDYIDPIDFPVEIIQSFKHNTYLIDCEISEYDVIYNISKHYPVISMQSNEDCAYIDVYERHTTSYTTVSPEDTLAPLIEKLDLLAVQEPKILCFSWQMDRNYIVDYRIEQLLKAGHLVVCAGGNRDLPVIDISPVAVDGVIRVGGNKHNGCYQNWIDIYDVTDPTEPNSNKAVHNICTKMVHKQLELDYVLDYYSDSSVRSAPWPLRLAQTPSKQTKYYEFNPVSNLRYCAGEHLIPVRPGDNVSMLYGGCELENFVEARYVDLGVELPRGITFNLQSGWLYGTFKFKENMFHRFQVDLNGQLFEYHLISCDAENKLEYNDVKEKYYNRPYDAPPFTMREYWVPMARPIKLLEPGDPFIRTYNLNDLHLYRSYE |
| Ga0211498_100013486 | F034245 | AGGAG | MRGVTFSEFGNGQNVDMFYNAPDCIPDIPIKEAKNTAIKIRNKYTKDIYVWCDYSVQHMYSQIAMQGFKMAGIDFVAAIPVLSDNLSKRENDCTIAYCEARGIKYELFHIDVPALFDGPEFLYWGENFPTTQPQMTIVGKFFDLLPDCCIVYPGFMAHVSNSDWTRSKNNGFMPFVPHQTQEHAAEVSGKEYTNFQEHYVDMYTSWMFTQSYGDVLKSSTQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLISIELLKSHFGHDKYDNTLRQRLAPYGPLTMKYASLQYTVKVDTRLKEMLEKHHETNFDFINKLF |
| Ga0211498_100013489 | F022909 | N/A | MVRVGRRQMVDITDKEILRTFFDGKIGCIEYSDKWLPQLEQFCSIAKDCGYENNSSPKAMKVDEIQYHCMVHIPTNEIYAVAGVQYMPEYKEGYYRIWTRLCRIPKSDIPMTRATRYGRGEMPEFDGLLYFNCEWASKQPNFKATFGTTLANKAYADNYVRSSNTITDYVKRHWWLKKGIAEPEGITEFYTVPQVVWRMHFDKFKELS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |