NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211498_10002796

Scaffold Ga0211498_10002796


Overview

Basic Information
Taxon OID3300020380 Open in IMG/M
Scaffold IDGa0211498_10002796 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6343
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_057
CoordinatesLat. (o)-17.0283Long. (o)42.7449Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F000499Metagenome / Metatranscriptome1074Y
F007531Metagenome / Metatranscriptome349Y
F040642Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0211498_1000279611F040642AGGAGMNRLNWILKEIYKDGKKNFMWIIKGAAITLAMIALIKVLIAFDLRDWFLPIVAVVVPVGMLYHWYSMSYDQEQNKIITKLKGK
Ga0211498_100027962F000499AGGAGMQKDIFKEDYFGTLFSILVDESRRLMPEFNPTALLHQTQKKMCEAGTWIDDLPYGTIIQSVPQESVVKLMESVLPEYRRLAANLIDQFINEYESQGGRRAEITEKFERMYIWRQ
Ga0211498_100027966F000302GAGGMVKVMTQDVKDRIADLERQKITLEDRLEIISYSNNLVKMHQIEEEIFEVEDTIKKLLA
Ga0211498_100027968F007531AGGAGMFKKVEKQILDFAKETGLTERTEIVHGTLYVKLWDHVECDNFHKMIRTFYKKQIENDGGVNMYAVGDEFAFDFVPEDREAPVFVEPYSDETYSGKEEMDPADIDEEYGVWSEFAEEGLREDAEIDVALNLEAESKRGK
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Institute for Fundamental Biomedical Research
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