NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211498_10052122

Scaffold Ga0211498_10052122


Overview

Basic Information
Taxon OID3300020380 Open in IMG/M
Scaffold IDGa0211498_10052122 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1525
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_057
CoordinatesLat. (o)-17.0283Long. (o)42.7449Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018189Metagenome236Y
F024809Metagenome204Y
F038719Metagenome165Y
F080142Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0211498_100521221F080142GGAGMMKVRAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEYEYEVWSYNDALQKIKNLVQQQEQ
Ga0211498_100521223F018189GAGGMELSKEQMEKVIYELECNYNSKIFDDENLIEIINLFKKYLNSGKTK
Ga0211498_100521224F038719AGGAGGMDSKTRDKILHRCEILRYMGDDGISCIFDQLPDDELMEDCGWVLDKEHDDLDQYQFGVTRKIINDRAPKTNNNDMWG
Ga0211498_100521226F024809AGGAGGMNYSQKVLFDDWISRCPIEGVFVDEPVSQVKMDDGEFGYLIKVFLTINKEDWEQNQTPPGFSENLPSQNGLQGR
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