NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211646_10005043

Scaffold Ga0211646_10005043


Overview

Basic Information
Taxon OID3300020383 Open in IMG/M
Scaffold IDGa0211646_10005043 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6076
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_109
CoordinatesLat. (o)2.1008Long. (o)-84.5107Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F016675Metagenome / Metatranscriptome245Y
F055786Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0211646_1000504314F016675N/AMRNFEVDYETTVPPWHTGHEKYEAEDLDTAKEMFRSKHEAARIYKLTEVLYDQRFAV
Ga0211646_100050432F055786N/AMICSYCYKSQIAVKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKDRTWMDYKPPRIFGKKKTIGAITDKQFTENLTN
Ga0211646_100050439F000615N/AVSGSERPENIMCRIRLFYECSDGSMGFAEHLMPYSEDIAGFIKHWKTGGRMVITEYFDLV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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